Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0645
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    32   0.34 
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    28   5.5  
Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   9.6  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astac...    27   9.6  

>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 242 IFIIISLPVLAGAITILLT-----DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 406
           I+I++ + +    ITI L      + N ++ F DP  G DP LY++    F +  V I  
Sbjct: 163 IYIVLGICLAYFLITIFLVKPVVFNENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICT 222

Query: 407 LPGFGIISHI 436
           +  +G IS++
Sbjct: 223 IVFYGYISYV 232


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 436 YFTRKRKKRNFWLFRNNLCYTSNWVLGFIV*AHHIFTVGIAIDTRGIFYFSYYKYCCTNR 615
           +F  ++    FWL    LCY+ +W       +  +F   + + T  I   + YK   +NR
Sbjct: 145 FFYYEKSSYTFWLVDTPLCYSVSWY------SDILFNNSLVVFTLAINLITVYKAGKSNR 198

Query: 616 N 618
           N
Sbjct: 199 N 199


>Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical
           protein W07G4.1 protein.
          Length = 126

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 YSIFIIISLPVLAGAITILLTDRNLNTSFFD 328
           Y +  ++ LP     IT+++ DR+L T+F D
Sbjct: 64  YPLTRVLLLPNQMNIITVVIADRSLTTNFMD 94


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 395 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 300
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 395 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 300
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 NFISTFILIFWTS*SLYFNFTRIWYNFSYYF 441
           N++ T+I+I WT   + +++   +YN S+ F
Sbjct: 111 NYVLTYIIINWTLPPVIYSYFFFFYNCSFPF 141


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
            F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 348  GSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDI 253
            G PPPA S     +F +  N+V +   TG D+
Sbjct: 1048 GPPPPAPSPRTEDRFLAFQNLVASTITTGDDM 1079


>U10414-12|AAA19079.3|  497|Caenorhabditis elegans Nematode astacin
           protease protein28 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
 Frame = -3

Query: 104 SKIYGSSSMCDIR*KW---GV----NCSSCSCTIFYNSSSC 3
           +K+Y  +S C I+ K    G+    NC+ C C  ++  +SC
Sbjct: 313 NKLYNCTSQCKIQMKCSNCGITDSRNCNQCKCPRYFTGASC 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,297,671
Number of Sequences: 27780
Number of extensions: 254672
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)