Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0644
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   3.7  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +2

Query: 17  IPSISKSILRALNHLSTFSQLSRYCSKSITISNCLSYSYRISAKLNEFRHSW*IHRVRVH 196
           I  ISK + R+L+H+  F       S S+  S+ L    R   K  E      + R  V 
Sbjct: 214 ISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENV----LRRYIVE 269

Query: 197 YISCSVPSSPD 229
           Y++C    SPD
Sbjct: 270 YVTCKTCKSPD 280


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 333 PHPSNRNALLLHGGNRQSGGTYP 265
           PHP N   +LL G N Q+  + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 438 LVHPSKRXKKSXCEPYFYFFLIYFLCAHRKEGIIQSN 548
           L+  SKR      E +  F   YF   HRK   IQSN
Sbjct: 133 LILSSKRFDILVIEGWEAFRSSYFASIHRKNNSIQSN 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,661
Number of Sequences: 5004
Number of extensions: 48190
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)