Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0644
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               31   0.55 
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     30   1.7  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 30   1.7  
SB_33601| Best HMM Match : Metallophos (HMM E-Value=6.4e-19)           29   2.2  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)        27   8.9  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 345 LQRLPHPSNRNALLLHGGNRQSGGTYPCGLQEVLPHCLLSGEEGT 211
           +QR P P+ RN++ LHG   Q+   +    Q  +P C  S  +GT
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQTATNFN---QPQMPTCTGSSPQGT 71


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 332 PTLQTETHYCFTAEIGRV-VVPTR-ADSKRSYLIACYQVKKVRYRKYNEL*LYGFTSC 165
           P L T  HYCF  E  R  + PT+   +KR    +C +        Y+   LY  TSC
Sbjct: 91  PKLGTSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQWITSYSWDELYNLTSC 148


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 332 PTLQTETHYCFTAEIGRV-VVPTR-ADSKRSYLIACYQVKKVRYRKYNEL*LYGFTSC 165
           P L T  HYCF  E  R  + PT+   +KR    +C +        Y+   LY  TSC
Sbjct: 326 PKLGTSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQWITSYSWDELYNLTSC 383


>SB_33601| Best HMM Match : Metallophos (HMM E-Value=6.4e-19)
          Length = 675

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 107 ISNCLSYSYR--ISAKLNEFRHSW*IHRVRVHYISCSVPSSPD 229
           I  CL + Y   I  +LN+    W +HR+R  + + S P  PD
Sbjct: 479 IYECLRFCYFNIIQDELNQVAKHWNLHRIRPSHNAESPPGKPD 521


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 332 PTLQTETHYCFTAEIGRV-VVPTR-ADSKRSYLIACYQVKKVRYRKYNEL*LYGFTSC 165
           P L T  HYCF  E  R  + PT+   +KR    +C +        Y+   L+  TSC
Sbjct: 326 PKLGTSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRSFGQWITSYSWDELHNLTSC 383


>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 57  ICPLFLSLVGTAVKV*QYQTVYPIHIVYLLNLMSLDTAGESIELEFIIFPVAYLLHLITS 236
           +CP   S +  + K  Q +T      + +L+L S    GE++E+  +      L     S
Sbjct: 6   LCP---SCINLSSKSGQRRTHLMTGEMPVLSLFSRKVVGETVEITEVYPCFPSLAETTRS 62

Query: 237 NEVGPLGVRTG 269
           N + P+GV+ G
Sbjct: 63  NSMSPMGVKQG 73


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 307 TASRRK*AEWW-YLPVRTPRGPT 242
           T  RR  +EWW YL  RTP G T
Sbjct: 7   TPGRRTNSEWWMYLYHRTPEGAT 29


>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 86  YCSKSITISNCLSYSYRISAKLNEFRHS 169
           YCSK +  SN ++     + ++NEF+H+
Sbjct: 247 YCSKLLHFSNSIANVLIYTLRINEFKHT 274


>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
          Length = 229

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 69  FLSLVGTAVKV*QYQTVYP-IHIVYLLNLMSLDTAGESIELEFIIFPVAYLLHLI 230
           F+SL  + +KV      +  ++++Y+    + D+  ++  +EF++ PVA L  L+
Sbjct: 131 FVSLYNSVMKVIYISCAFATLYLMYIKFKATYDSNHDTFRVEFLLIPVAGLACLV 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,010
Number of Sequences: 59808
Number of extensions: 357974
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)