Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0644
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    29   1.9  
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 303  LHGGNRQS---GGTYPCGLQEVLPHCLLSGEEGTLQEI 199
            L  GNR+S    GT  CG Q++L HC  +  E  L  +
Sbjct: 2214 LQSGNRESFLITGTTGCGKQQLLKHCFQNDPESQLASL 2251


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 337 AAPPFKPKRITASRRK*AEWWYLPVRTPRGPTSL 236
           +APP  PK +    R  A W  +P + PRG T +
Sbjct: 404 SAPPRPPKNLALEARP-ARWVPIPAKRPRGETKI 436


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 237 NEVGPLGVRTGRYHHSAYFRREAVMRFGLKGG 332
           N +GPLG   G   H   F R+   RFG  GG
Sbjct: 272 NPLGPLGQPRGGGSHGRPFMRDPNGRFGGNGG 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,183
Number of Sequences: 27780
Number of extensions: 272935
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)