Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0642
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   2.6  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.4  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   4.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   7.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 326  KKESSKSIHPVKSYEVTNIKNNIQSN*ELPS 418
            K ES  ++  +K+Y VTNI+NNI++   LPS
Sbjct: 1127 KNESKAALEQMKNY-VTNIENNIRAK-LLPS 1155


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 335 SSKSIHPVKSYEVTNIKNNIQSN*ELPSFLKSVKNPKVDFISIIRE 472
           S  +I+P+ +++VT+I   + +   L S LK  KN     I+++RE
Sbjct: 352 SQTAINPLANFDVTSIPVEVATEIVLTSLLKIDKNYFHQQINMLRE 397


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 584 FEQ*CPNETKVILNYDFFIIICYYTMLLTI 495
           +++ C +   ++L Y+ FII  YY +L+ +
Sbjct: 48  YDRICYDYKNILLKYELFIIYYYYYLLICL 77


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 608 YNFFCN*FVIVVYRINSLRKNKIYIYSFY-HG 700
           Y +FC+ F I +++   L   K YI+ ++ HG
Sbjct: 91  YRWFCHYFPIRLHKTTELDSEKNYIFGYHPHG 122


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 582 RTIMSKRDKGHFELRFFYNNMLLYY---ATHNRFFASHNIS 469
           ++++S +   HF L  F N  LLY+    +H+ F  SH IS
Sbjct: 138 KSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLIS 178


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +2

Query: 77  RHALTKNRLQIEKKKIFKNKLTYTKNNNHRNRLA*Y*VIELFILYLSRTYLMQI*DLYDF 256
           ++ LT++ ++  KKK   N++   K NN +  L+ +     F++ L+      + D  DF
Sbjct: 171 KYGLTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPIQFVMELAAALAAGLRDWVDF 230

Query: 257 SWI 265
             I
Sbjct: 231 GVI 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,695
Number of Sequences: 5004
Number of extensions: 45247
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)