Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0642
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132...    30   2.0  
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    29   3.5  
06_01_0649 + 4698384-4698780,4699047-4699144,4699673-4699697,469...    28   8.2  

>11_01_0161 -
           1327286-1328592,1328819-1329000,1329279-1329436,
           1329852-1329996,1330083-1330207
          Length = 638

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 582 RTIMSKRDKGHFELR--FFYNNMLLYYATHNRFFASHNISRIIEMKSTLGFLTDF 424
           + ++ K +K    L+   FY    LYY  H RF  + N+ R+   K  L F+  F
Sbjct: 98  KPLLKKMEKNRIGLKRSAFYMAYALYYEKHKRFEDAENMYRLGTQKYHLPFINVF 152


>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 561 DKGHFELRFFYNNMLLY--YATHNRFFASHNISR 466
           D+ HF+ +F    M  +  +AT+ RFFAS+N  R
Sbjct: 268 DQVHFDSQFGLMGMAFHPNFATNGRFFASYNCDR 301


>06_01_0649 +
           4698384-4698780,4699047-4699144,4699673-4699697,
           4699809-4699929,4700022-4700156,4700392-4700602
          Length = 328

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 228 KYVRDKYKMNNSITQYH 178
           K++ D+Y +N+S+++YH
Sbjct: 143 KFIADRYSLNHSVSEYH 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,882
Number of Sequences: 37544
Number of extensions: 210728
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)