Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0642
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U70845-3|AAB09101.1|  244|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat...    27   9.8  
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi...    27   9.8  

>Z81583-5|CAB04673.1|  574|Caenorhabditis elegans Hypothetical
           protein T02G6.5 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 435 KTLKSISSRLFVKYCDLQRIDCE*HSIITYYYKKIVIQNDLC 560
           +TL  +  +L+VK   L +     H++    Y+KIV+Q D+C
Sbjct: 213 RTLCHLQHKLWVKIFRLYKKPFNLHNLPYPAYRKIVLQMDIC 254


>U70845-3|AAB09101.1|  244|Caenorhabditis elegans Hypothetical
           protein F22H10.4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 247 IRFLMDTIMRTGLNRKGSHGKRQLSNKKRI 336
           IR L+DT++RT  +RK      ++ +KK I
Sbjct: 200 IRDLLDTVLRTASSRKSLFQSAEIGSKKSI 229


>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
           endocytosis protein6, isoform a protein.
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 LIRFLMDTIMRTGLNRKGSHGKRQ 315
           L+ FLM T + TG N K + GK Q
Sbjct: 854 LVDFLMRTFLETGFNNKHTVGKTQ 877


>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
           receptor-mediated endocytosis 6 protein.
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 LIRFLMDTIMRTGLNRKGSHGKRQ 315
           L+ FLM T + TG N K + GK Q
Sbjct: 854 LVDFLMRTFLETGFNNKHTVGKTQ 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,391
Number of Sequences: 27780
Number of extensions: 241080
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)