Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0642
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 558 KGHFELRFFYNNMLLYYATHNRFFASHNI---SRIIEMKS---TLGFLTDFKKEG 412
           +G   LR  Y N+ LY  T N    ++NI     I+  +S    + F+ D+K EG
Sbjct: 81  QGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEG 135


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 276 SHNGIHEKSYKS*ICIKYVRDKYKMNNSITQ 184
           SH+    + +KS IC++++ +  KM    T+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTK 506


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 276 SHNGIHEKSYKS*ICIKYVRDKYKMNNSITQ 184
           SH+    + +KS IC++++ +  KM    T+
Sbjct: 476 SHSRCPPEIHKSCICVRFIAEHTKMLEDSTK 506


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 667 FSQTINSINYNHELITKKI 611
           F QT+N +N+N   + K +
Sbjct: 49  FEQTLNELNFNLNYVNKGV 67


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 320 LIKKESSKSIHPVKSYEVTNIKNN 391
           +I   S+K+IH   +Y   N  NN
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,898
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)