Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0639
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   6.2  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 576 RQPSLFREYFCLLYS*LGLIGTFINTDHIF 665
           R   LFRE FC  Y  + L G  I+ +H F
Sbjct: 150 RNQPLFREVFCFTYGVVVLWGYTIDEEHRF 179


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 275 LLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEILT 394
           +++V LGEV  YI +     RWDT     I K    ++ T
Sbjct: 99  IIQVQLGEVIGYIANFDFPDRWDTLLPDLISKLSAVDMNT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,059
Number of Sequences: 5004
Number of extensions: 56139
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)