Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0639
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444...    29   2.8  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    29   4.9  
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    29   4.9  
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    28   6.5  
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210...    28   6.5  

>03_02_0801 +
           11343227-11343885,11344018-11344087,11344362-11344433,
           11344511-11344980,11345626-11346598
          Length = 747

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 664 NMWSVLMNVPINPN*LYNRQKYSLKRLGCLALHRFI 557
           N W +L ++P  P     +QK S+    CLALH FI
Sbjct: 665 NKWRILFHLPSYP-----QQKQSMIICACLALHNFI 695


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 39  STGEPIIGVINQPFANEGQGNIIWGISYNDYKRWGGTYDMNFHSPPNTLLISASENIEIV 218
           S G   +G++  PFA EG+   +   +           D     P + LL + S N  + 
Sbjct: 229 SMGILTVGIVTTPFAFEGRRRALQ--AQEGIASLRSNVDTLIVIPNDKLLTAVSPNTPVT 286

Query: 219 EKFNKAD 239
           E FN AD
Sbjct: 287 EAFNLAD 293


>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 338 WDTCAGHAILKAKGGEILTYNNRTPITYNTPLTASTKDNGNLDGIIAFSNDAIYQKLM 511
           W+T A     +AK    +    R    Y+T  + S KD    DG+IA   D ++ +++
Sbjct: 177 WETVAP-LFERAKVKTKVIVTQRAGHAYDTLASLSDKDLKKFDGVIAVGGDGLFNEIL 233


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 716 VEIYYFWAVLVRCCLPTE 663
           VEI+ FWA    CC+PT+
Sbjct: 472 VEIHLFWAGKGTCCIPTQ 489


>04_04_1156 -
           31319747-31320085,31320556-31320706,31320795-31321026,
           31321121-31321331,31321646-31321764,31321835-31322032,
           31322163-31322364,31322456-31322832,31322937-31323007,
           31326264-31326329,31326414-31326479,31326761-31326835,
           31326944-31327018,31327115-31327186,31327683-31327904,
           31328012-31328083,31328425-31328496,31329410-31329481,
           31329716-31329896,31332132-31332237
          Length = 992

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 716 VEIYYFWAVLVRCCLPTE 663
           VEI+ FWA    CC+PT+
Sbjct: 544 VEIHLFWAGKGTCCIPTQ 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,698,173
Number of Sequences: 37544
Number of extensions: 319205
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)