Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0639
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)            44   2e-04
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)             43   3e-04
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           29   5.0  
SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +2

Query: 254 MPGAGNKLLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEIL 391
           M   G KLLKV    V AY++S+ T F+WDTCA HAI++A GG ++
Sbjct: 276 MSTVGYKLLKVIDSTVDAYVLSRATSFKWDTCAAHAIIRAMGGGVV 321



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   CVTVLIGAYLISTGEPIIGVINQPFANEGQGNIIW 110
           CV VLIG Y   TG+PI GVINQPF    +    W
Sbjct: 182 CVCVLIGVYDEITGQPIAGVINQPFIKYNETTQTW 216


>SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)
          Length = 240

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 260 GAGNKLLKVALGEVSAYI-VSKPTIFRWDTCAGHAILKAKGGEILTYNNRTPITYNTPLT 436
           GAG K+L +  G   AY+ V+K  I +WD CAG AIL+A GG + T      I Y  P +
Sbjct: 161 GAGYKVLSLFDGSADAYVHVTK--IKKWDICAGDAILRALGGRMTTLKG-DDIIYTDP-S 216

Query: 437 ASTKDNGNL 463
               D G L
Sbjct: 217 KPANDQGLL 225


>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
          Length = 868

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +2

Query: 260 GAGNKLLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEI 388
           G+G K+L +  G+   YI + P    WDTCA  AIL+A GG++
Sbjct: 102 GSGYKVLLLLDGDADGYIFASPGTKMWDTCACQAILEAVGGKL 144


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +3

Query: 6    CVTVLIGAYLISTGEPIIGVINQPFANEGQGNIIW 110
            CV VLIG Y   TG+PI GVINQPF    +    W
Sbjct: 1479 CVCVLIGVYDEITGQPIAGVINQPFIKYNETTQTW 1513


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 36   ISTGEPIIGVINQPFANEGQGNIIWGISYNDYKRWGGTY--DMNFHSPPNTLLISASENI 209
            IS    I+G+ +Q  A  G  +  + +  ND  RWGG +   M +     T   +   N+
Sbjct: 1157 ISRDYSILGLGDQLKALSGATSFKYKLEANDRGRWGGVWLAPMEYTFTSTT---NIQTNV 1213

Query: 210  EIVEKFNKADWE 245
             +V K+N   WE
Sbjct: 1214 SLVRKYN--SWE 1223


>SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 395 YNNRTPITYNTPLTASTKDNGNLDGIIAFSN 487
           ++N+T +T+N PL      + + D ++ FSN
Sbjct: 71  FHNKTAVTFNIPLDGCGTRHKSRDSLLVFSN 101


>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 150 YDMNFHSPPNTLLISASENIEIVEKFNKADWEVKICQERVIN 275
           YD+N        LIS   NI++ ++    D  V++CQE+VIN
Sbjct: 178 YDINVQVSIQEQLIS-DINIQVCQEQVINDVNVQVCQEQVIN 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,827,634
Number of Sequences: 59808
Number of extensions: 385866
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)