Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0639
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032655-9|CAA21725.3|  339|Caenorhabditis elegans Hypothetical ...    42   3e-04
AL032655-8|CAH60799.1|  348|Caenorhabditis elegans Hypothetical ...    42   3e-04
U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical pr...    42   6e-04
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    29   4.4  
U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    28   7.7  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    28   7.7  

>AL032655-9|CAA21725.3|  339|Caenorhabditis elegans Hypothetical
           protein Y6B3B.5a protein.
          Length = 339

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = +2

Query: 260 GAGNKLLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEILTYNNRTPITYNT 427
           G+G K L++  G    Y+ +   I +WDTCAG AIL+  GG +L    + P+ Y++
Sbjct: 256 GSGYKTLRLVNGTAELYLHTT-AIKKWDTCAGDAILRTMGGAMLDLEGQ-PLRYSS 309


>AL032655-8|CAH60799.1|  348|Caenorhabditis elegans Hypothetical
           protein Y6B3B.5b protein.
          Length = 348

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = +2

Query: 260 GAGNKLLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEILTYNNRTPITYNT 427
           G+G K L++  G    Y+ +   I +WDTCAG AIL+  GG +L    + P+ Y++
Sbjct: 265 GSGYKTLRLVNGTAELYLHTT-AIKKWDTCAGDAILRTMGGAMLDLEGQ-PLRYSS 318


>U42833-4|AAA83579.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK430.2 protein.
          Length = 319

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +2

Query: 260 GAGNKLLKVALGEVSAYIVSKPTIFRWDTCAGHAILKAKGGEILTYNNR 406
           GAG K+LKV  G  +AY+ +     +WDTCA  A+L A GG +   + R
Sbjct: 225 GAGFKVLKVLEG-CAAYVFASAGCKKWDTCAVEAVLTAAGGTLTDISGR 272



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 9   VTVLIGAYLISTGEPIIGVINQPFANEGQGNIIWGI 116
           VTVLIG  +   G P+ G+I+QP+ +E  G  +W I
Sbjct: 142 VTVLIG--IAYKGRPVAGIIHQPY-HEKLGRTVWAI 174


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 84  NEGQGNIIWGISYNDYKRWGGTYDMNFHSPPNTLLISASENIEIVEK 224
           NEG  +I +G   + + R G   + NFH   +TL  S S+  + V K
Sbjct: 128 NEGVKSISYGRKVHQFVRAGSLSEFNFHDLMSTLKSSVSKGSKPVIK 174


>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
           protein ZC196.8 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 588 LFREYFCLLYS*LGLIGTFINTDHIFSGQAT 680
           LF +YF + Y    L+  F+NT  I +G AT
Sbjct: 202 LFAQYFQITYVAAFLVKRFVNTMEILAGAAT 232


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 192 SASENI-EIVEKFNKADWEVKICQERV 269
           ++S+N+ E+VEK N  DW ++I  E +
Sbjct: 305 NSSKNVAEVVEKMNNGDWPIQIEDEDI 331


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 HTLYQSQQYFVGTHVLVTLSSK 371
           HT Y++  YF   H+L TL++K
Sbjct: 142 HTCYKTDMYFTAKHLLRTLTAK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,152
Number of Sequences: 27780
Number of extensions: 305887
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)