Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0639
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri...    28   7.2  
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    28   7.2  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    28   7.2  

>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
           repeat family protein contains Pfam profiles: PF00023
           ankyrin repeat, PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 481

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 398 NNRTPITYNTPLTASTKDNGNLD 466
           N R P+ Y+TPL  S   NGN+D
Sbjct: 43  NERNPVMYHTPLHVSA-GNGNVD 64


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 322 ANNISLGHMCWSRYPQSQGW*NSNLQQPHSYNIQHTSNSFY 444
           A N+ + HM + + PQ   + + + QQ  + N+Q  ++ F+
Sbjct: 251 AYNLGMAHMQYQQQPQQSFFQHHHQQQTDAQNLQQMTHQFH 291


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 IWGISYNDYKRWGGTYDMNFHSPPNTLLISASENIEIVEKFNKADWEVK 251
           +W I  N   RW  TY ++ H   N + +     +EI  +F  A + ++
Sbjct: 335 VWVIGSNLVLRWTWTYKLSAHLRNNYITVFIITALEIYRRFQWAFFRIE 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,196
Number of Sequences: 28952
Number of extensions: 277358
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)