Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0636
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   3.5  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.6  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   8.0  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 576 CIGTYYLPIYSGK 614
           C+G YYLP Y GK
Sbjct: 494 CVGYYYLPKYGGK 506


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 706 KNGNPGGTPHFQPWVPRKD 650
           K+ NP  TP  Q W+P++D
Sbjct: 525 KSFNPKATPDPQRWIPKRD 543


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +2

Query: 278 PSNYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLH-NKQFGFTRGR------STTDAGA 436
           P+N  P+ +    S  F +  L QL +  KSN+  +  KQF     R       TT+  A
Sbjct: 204 PNNTSPLKLFQGASDPFTREHLNQLTQDVKSNSFENGEKQFSLPEPRRPQKPMRTTERKA 263

Query: 437 YL-IKNIFQSWEE 472
            L  K+++Q  EE
Sbjct: 264 SLNTKDLYQEVEE 276


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 282 EGSSVLPDLKEESLYYVSLSQE 217
           E  S +P L+E S+Y+VSL  E
Sbjct: 15  ENGSPIPALEEGSVYHVSLKSE 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,452
Number of Sequences: 5004
Number of extensions: 60389
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)