Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0636
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    33   0.29 
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    31   1.2  
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    24   4.3  
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    24   5.5  
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052...    28   6.3  

>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 287  YRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSW 466
            YRPIS+     KI  K++ T+L   F    ++H  Q GF +GR  ++   Y  + I   +
Sbjct: 988  YRPISLQNCSVKILSKVLATRLQRVFL--RMIHLDQTGFLKGRCISENLIYATELIQACY 1045

Query: 467  EESHDCLGIFCDLSK 511
                  + +  D +K
Sbjct: 1046 RRKCQTIIVKLDFTK 1060


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +2

Query: 284  NYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQS 463
            +YRPIS+   + K+  K ++ +L      ++L+  +Q  F +GR  TD  A L    F S
Sbjct: 966  DYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSKEQSAFIQGRMITD-NALLAFECFHS 1022

Query: 464  WEESHDCLGIFC----DLSK 511
             +++       C    DLSK
Sbjct: 1023 IQKNKKANSAACAYKLDLSK 1042


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 24.2 bits (50), Expect(2) = 4.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
           Y PI+VLP+LS++ +  I   +T+      SN L  N   G
Sbjct: 376 YPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 416



 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 413 RSTTDAGAYLIKNIFQSWEESHDCLGIF 496
           R     GAY  +NIFQS + +   L IF
Sbjct: 447 RKFVTQGAYDTRNIFQSLDLAWSLLRIF 474


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
           Y PI+VLP+LS++ +  I   +T+      SN L  N   G
Sbjct: 406 YPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 446



 Score = 22.6 bits (46), Expect(2) = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 413 RSTTDAGAYLIKNIFQSWEESHDCLGIF 496
           R     GAY  +NIFQS + +   L IF
Sbjct: 477 RKFVTQGAYDTRNIFQSLDLAWTLLRIF 504


>03_06_0507 +
           34404843-34404968,34405091-34405151,34405260-34405296,
           34405365-34405386,34405861-34405957,34406037-34406180,
           34407034-34407173,34408205-34408255,34408347-34408429,
           34408515-34408590,34408646-34408760,34409080-34409575,
           34409682-34409895,34410000-34410070,34410527-34410695,
           34410787-34410916,34411330-34411742,34411839-34412039
          Length = 881

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 365 KSNNLLHNKQFGFTRGRSTTDAGAYLIKNIFQSWE 469
           K     H K  G  R   TTDA A L  ++  +W+
Sbjct: 152 KHKETSHKKDAGLERDGCTTDAAAVLFASVTSAWD 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,604
Number of Sequences: 37544
Number of extensions: 356910
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)