Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0636
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.038
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.038
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.038
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    33   0.15 
U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 284 NYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTD 427
           NYRPI +LP L K+F K +L ++         +  +Q GF R  ST D
Sbjct: 451 NYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 496


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 284 NYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTD 427
           NYRPI +LP L K+F K +L ++         +  +Q GF R  ST D
Sbjct: 622 NYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 667


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 284 NYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTD 427
           NYRPI +LP L K+F K +L ++         +  +Q GF R  ST D
Sbjct: 361 NYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 406


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +2

Query: 281 SNYRPISVLPTLSKIFEKIILTQLLEHFKSNNLLHNKQFGFTRGRSTTDA 430
           S+YRPIS+L  ++K+ EK IL ++    +S    H  Q GF    STT A
Sbjct: 403 SSYRPISLLSPIAKLLEKAILKRIKNSIESP--AH--QHGFKPEHSTTTA 448


>U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical
           protein C06G1.1 protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 174 HLVSIFNDCIKCGVFPDLMKHSKVIPLLNLVVLMTPLTIDLF-QYFL 311
           H+ +     ++  V P    H++++P+L+  ++ TPL+  LF QYF+
Sbjct: 187 HMQNFIRQTVEQVVCPSF--HAELVPVLSNRIMNTPLSASLFEQYFI 231


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 117 DLWGISVKVLKSVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVI 248
           D  GI VK L  +   + + L+S+FNDC  C V P     SK +
Sbjct: 181 DFDGIGVKGLAGIF--VPTSLISMFNDC--CNVKPVSKSSSKYV 220


>Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical
           protein F52B11.1b protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 450 FLIR*APASVVERPLVNPNCLL*SRLFDLKCSKSCVK 340
           +++R A      R  +NPNC+  SR+    CS  C K
Sbjct: 28  YIMRKAEPDKHPRQCLNPNCIYESRIDSKYCSDECGK 64


>Z70203-5|CAA94108.3|  429|Caenorhabditis elegans Hypothetical
           protein C05G5.5 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 ILTQLLEHFKSNNLLHNKQ 394
           +LT+LL +F  NNL HN Q
Sbjct: 18  VLTRLLVYFLQNNLAHNSQ 36


>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 568 GMGALELITFLFIQERIPTSRMWKGK*DLSG--APTVENGVYLQ 693
           G G LE I  +F++   PT  +W G  +L G  A T E   Y Q
Sbjct: 562 GRGELEQIKKIFMEMGTPTESIWPGVTELDGWKALTFEKYPYNQ 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,074,498
Number of Sequences: 27780
Number of extensions: 333910
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)