Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0636
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 SHDCLGIFCDLSKHLTVLNMKHGEETTSLWD*GWVHWNLLPSYLFRKGYQPVGCGK 640
           SH  L   CD  K    L  K+  +T S +  G +++NL+ +  ++  +   GCG+
Sbjct: 83  SHTRLSCDCD-DKFYDCL--KNSADTISSYFVGKMYFNLIDTKCYKLEHPVTGCGE 135


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 SHDCLGIFCDLSKHLTVLNMKHGEETTSLWD*GWVHWNLLPSYLFRKGYQPVGCGK 640
           SH  L   CD  K    L  K+  +T S +  G +++NL+ +  ++  +   GCG+
Sbjct: 88  SHTRLSCDCD-DKFYDCL--KNSADTISSYFVGKMYFNLIDTKCYKLEHPVTGCGE 140


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 473 SHDCLGIFCDLSKHLTVLNMKHGEETTSLWD*GWVHWNLLPSYLFRKGYQPVGCGK 640
           SH  L   CD  K    L  K+  +T S +  G +++NL+ +  ++  +   GCG+
Sbjct: 88  SHTRLSCDCD-DKFYDCL--KNSADTISSYFVGKMYFNLIDTKCYKLEHPVTGCGE 140


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 493 NSKTIMRFLPRLKYIFD*ISTCIS 422
           N+K  ++F P  K+I D + T IS
Sbjct: 879 NNKYALKFFPFDKHILDKLPTLIS 902


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,327
Number of Sequences: 438
Number of extensions: 4594
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)