Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0636
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 30 1.3
At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi... 29 2.3
At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domai... 29 3.0
At1g61640.1 68414.m06945 ABC1 family protein contains Pfam domai... 29 3.0
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 28 5.3
At1g26680.1 68414.m03250 transcriptional factor B3 family protei... 28 5.3
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 24 6.0
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 24 6.0
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 24 6.0
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 24 6.0
At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb... 28 7.0
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb... 27 9.2
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 305 LPTLSKIFEKIILTQLLEHFKSNNLLHN-KQFGFTRGRSTTDAGAYLIKNIFQSWEESHD 481
L T I EK+ Q+ +HF +N +L N +Q F + R D +++K+ S S +
Sbjct: 850 LITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKD--LFILKDDGDS-NASTE 906
Query: 482 CLGIFCDLSKHLTVLNMKHGEETTS 556
IF L++ + ++ ++ ++ S
Sbjct: 907 TSNIFSQLAEEINIVGVQSDKKPES 931
>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 367
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 186 IFNDCIKCGVFPDLMKHSKVIPLL 257
I+N+ ++CG+ PDL+ ++ VI L
Sbjct: 270 IYNEMVQCGIEPDLLSYTAVIDSL 293
>At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 477
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 635 HILLVGILS*INRKVISSNAPIPNPIVM*FPHHVS 531
H LL G+L+ R+V + +PNP+V P H+S
Sbjct: 119 HFLLPGLLALTYRQVAYAQRVVPNPVVY-SPSHIS 152
>At1g61640.1 68414.m06945 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 621
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 635 HILLVGILS*INRKVISSNAPIPNPIVM*FPHHVS 531
H LL G+L+ R+V + +PNP+V P H+S
Sbjct: 119 HFLLPGLLALTYRQVAYAQRVVPNPVVY-SPSHIS 152
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 129 ISVKVLK-SVIDIIASHLVSIFNDCIKCGVFPDLMKHSKVIPLLNLVVLM 275
IS VLK + ++ ++ S ND K + DL+K K P LN+ VL+
Sbjct: 377 ISYFVLKMECLQVVKVYVSSPMNDLKKMQLTEDLLKLPKASPKLNIQVLV 426
>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 920
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 495 KIPRQSCDSSQD*NIFLIR*APASVVERPLVNPNCLL*SRLFDLKCSKSCVK 340
K PR+ +SS D + F+ P+S+ + L P + S D +CS+ +K
Sbjct: 422 KNPREKVESSSDHSSFVGSVNPSSLYKDQLYLPRNFVSSNFLDKRCSEIVLK 473
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
Y PI+VLP+LS++ + I +T+ SN L N G
Sbjct: 366 YPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 406
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 431 GAYLIKNIFQSWEESHDCLGIF 496
GAY +NIFQS + + L IF
Sbjct: 443 GAYDTRNIFQSLDLAWTLLRIF 464
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
Y PI+VLP+LS++ + I +T+ SN L N G
Sbjct: 366 YPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 406
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 431 GAYLIKNIFQSWEESHDCLGIF 496
GAY +NIFQS + + L IF
Sbjct: 443 GAYDTRNIFQSLDLAWTLLRIF 464
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
Y PI+VLP+LS++ + I +T+ SN L N G
Sbjct: 365 YPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIG 405
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 431 GAYLIKNIFQSWEESHDCLGIF 496
GAY +NIFQS + + L IF
Sbjct: 442 GAYDTRNIFQSLDLAWTLLRIF 463
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 287 YRPISVLPTLSKIFEKII---LTQLLEHFKSNNLLHNKQFG 400
Y PI+VLP+LS++ + I +T+ SN L N G
Sbjct: 364 YPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIG 404
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 431 GAYLIKNIFQSWEESHDCLGIF 496
GAY +NIFQS + + L IF
Sbjct: 441 GAYDTRNIFQSLDLAWTLLRIF 462
>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
(RbohF) (RbohAp108) / NADPH oxidase identical to
cytochrome b245 beta chain homolog RbohAp108
[GI:2654868], respiratory burst oxidase protein F
[gi:3242456], from Arabidopsis thaliana
Length = 944
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 695 PWRYTPFSTVGAPERSYFPFHILLVG 618
P+ + PFS APE Y HI +G
Sbjct: 667 PFEWHPFSITSAPEDDYISIHIRQLG 692
>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
(RbohC) / NADPH oxidase nearly identical to respiratory
burst oxidase protein C from Arabidopsis thaliana
[gi:3242785]
Length = 905
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 695 PWRYTPFSTVGAPERSYFPFHILLVG 618
P+ + PFS AP+ Y HI ++G
Sbjct: 633 PFEWHPFSITSAPQDDYLSVHIRVLG 658
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,331
Number of Sequences: 28952
Number of extensions: 307780
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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