Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0635
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    29   2.0  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    28   6.0  
03_03_0256 + 15898702-15900420                                         27   8.0  

>04_04_0927 +
           29467121-29467168,29467518-29467604,29468180-29468269,
           29468547-29468741,29469056-29471080,29471208-29471354,
           29471520-29471923,29472015-29472144
          Length = 1041

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 255 FSNRDSPTIIE*SLPRDI--LVCCFNF 329
           +SNR SPT++E    RD+  +VC FNF
Sbjct: 572 YSNRSSPTLVEALEGRDVESVVCGFNF 598


>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 223 LNYFILNIHYNLVIVTALQLLSKVSQETYSSVALIFNFLHTYR 351
           L YF+L++++ L  + ++       + TY  V ++ N ++ Y+
Sbjct: 153 LEYFLLHVYFLLDGIYSIMFRKSTGKLTYKEVTILNNVINLYK 195


>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 132 NNFILKMNLLSELYIYNNKSSYLIKMKKHFI*AIVAQYLTSCRI 1
           +N++   +L +++ IY+ K  + +  KK F   IVA Y  +C++
Sbjct: 467 SNWLAAQSLDNQILIYSTKERFQLNKKKRFAGHIVAGY--ACQV 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,199
Number of Sequences: 37544
Number of extensions: 140248
Number of successful extensions: 200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)