Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0635
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  27   8.2  
SB_35666| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 428  YARHDYYRKLKRALMK*FQCF-YASLNL*VCKKLKIKATDEYV 303
            YA+ D Y+  +  LMK F+CF +   NL   +  KI   D Y+
Sbjct: 979  YAKMDQYQDAESYLMKSFKCFEHIFTNLGKLEDAKINIVDTYI 1021


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 346 RYVKN*KLKQQTSMSLGRLYSIIVGLSRLLNYSVYLK*SS 227
           RY+   K+K+Q   +  RL  +IVG + +  +S +L+ SS
Sbjct: 337 RYIPKCKVKKQQRKAQKRLKHLIVGFTNIGIFSAFLEVSS 376


>SB_35666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 226 NYFILNIHYNLVIVTALQLLSKVSQETYSSVA 321
           +YF +N+  NL+++     LS +S +TYS+ A
Sbjct: 89  SYFDVNVR-NLIVIVIETYLSSISSKTYSTKA 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,923
Number of Sequences: 59808
Number of extensions: 190840
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)