Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0635
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.40 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 198 FSWFFYNYN*IHENVHK*PIITNNFILKMNLLSELYIYNNK 76
           +SW    YN  ++N+    I   ++I + N+ + + I+N+K
Sbjct: 22  YSWNVIEYNFPNDNIRNTLISNGDYIEENNMPNGMQIWNDK 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 338 KKLKIKATDEYVSWETLLNNCRAV 267
           K+ KIK +  Y S ETL   C  +
Sbjct: 335 KREKIKISVSYPSTETLNTKCNTL 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,736
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)