Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0634
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    29   4.6  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    29   4.6  
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684...    28   6.1  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    28   6.1  
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581     28   8.1  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    28   8.1  

>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
            2875909-2875947,2876309-2876354,2877380-2877922,
            2878827-2880847,2880972-2881215,2881642-2881684,
            2881923-2881962,2883580-2883675,2883712-2883759,
            2883964-2884290
          Length = 1498

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
 Frame = +1

Query: 1    IRHEIKNL-SLKSIKLIYKN---GIRRQEIQDDFLREL**VHEDHRRGSDHPQSRQRGHP 168
            +RH ++ L +L+ ++++Y     G++ + +Q DFL+ L  +H+ H       + R+   P
Sbjct: 966  VRHFVQELGNLRELRVLYAKIYIGLKDESMQRDFLQSLGCLHKVHTMNIYSIEVRECTRP 1025

Query: 169  D 171
            D
Sbjct: 1026 D 1026


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -1

Query: 369 VSDFKTVGGLLN---LLEGVAFECXYGFHLSTVSAVLFELFAGLNFISVVLKVEEVTKLY 199
           + DF T  G+     +L G      +G+ ++        L  G+ F S++L  E +T L 
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455

Query: 198 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 94
           +       T+G+T L A   +     +F  S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483


>07_03_0276 +
           16166528-16166796,16166824-16167291,16168048-16168414,
           16168565-16168587,16170094-16170385
          Length = 472

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/89 (28%), Positives = 37/89 (41%)
 Frame = +1

Query: 271 DRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRVYKVQ 450
           D  DG +++   T EG+ ++ VQ  P  +    +  F  +E +     K  +C R     
Sbjct: 44  DAGDGLEIEPATTTEGSEMEGVQSQP-VVPFVGMEFFSDKEARVYYNRKVSSCKRSNVT- 101

Query: 451 *KDSTPRSGFGAADSRTSRAQLCLFSIYS 537
            KD   R  F     RTS+ Q    SI S
Sbjct: 102 -KDYN-RYEFACYSERTSKEQNAKSSIGS 128


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 444 LVDSGASHVLSCHXSFHLLRAEFPDVSDFKTVGGLLNL 331
           L+D+           +HL   +FPDV  FK V G  N+
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLGGYNI 535


>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
          Length = 250

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 256 EEFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVRE 378
           E+F  D A  A   S   F+G  L Q+   PDG      RE
Sbjct: 167 EDFLVDEATAASSSSDGLFQGGLLAQIGGVPDGYAAWAGRE 207


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
 Frame = -1

Query: 390 LRAEFPD-------VSDFKTVGGLLN---LLEGVAFECXYGFHLSTVSAVLFELFAGLNF 241
           L+A+FP        + DF T  G+     +L G      +G+ ++ +      L  G+ F
Sbjct: 404 LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLGRIILRKFGWGVAAMITPTVLLLTGVGF 463

Query: 240 ISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 94
            S++L  + +T     P L  +T+G+T L A   +     +F  S+K+S
Sbjct: 464 FSLILFGQPLT-----PML--ATMGMTPLLAAVYVGALQNIFSKSAKYS 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,629
Number of Sequences: 37544
Number of extensions: 323718
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)