Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0634
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
 Frame = +2

Query: 47  SIKMEFVGKKYKMTS-SENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSST 223
           S K E    KY+     E F++  +   +G++ +  AN      E+    D+ NLV    
Sbjct: 176 SFKTELERHKYEFAQMKERFND--QNARLGIVEKTVANQKGDIAEIWMRFDQENLVGEVR 233

Query: 224 FKTTEMKFK-PAKSSKRTALTVL-R*NPXXHSKATPSSKFRRPPTVLKSLTSGNSALRR* 397
            +    KFK   K++K   L+++ R      S+  P+   RR   +  S+T   + L + 
Sbjct: 234 MRDKLKKFKVKTKANKECLLSLMKRLEVQDDSQTNPNKLNRRLSQLESSITIHKTKLFQE 293

Query: 398 KLX*QLRT*LAPEST 442
            L  Q++  ++ + T
Sbjct: 294 DLRIQIQQAISYDGT 308


>SB_30758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 431 PESTRSSKRTLLRGRXLVXPIHEHPAHNYVYL 526
           P    ++ R LLR R  V P HEHPA++Y Y+
Sbjct: 339 PGLGEATLRHLLRPR--VDPPHEHPAYDYDYI 368


>SB_21354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 668 CYPWSLNLFKVSSPPLA 618
           CYPWS  +F+   PP++
Sbjct: 781 CYPWSKQIFRHEGPPIS 797


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +2

Query: 185  KDGDEYNLVTSSTFKTTEMKFKPAKSSKRTALTVLR*NPXXHSKATPSSKFRRPPTVLKS 364
            K    Y  +TSS   T   K   ++S+ R A      +   H+K T S    +  T+   
Sbjct: 1710 KSSTRYAKLTSSKSTTYHAKLTSSESATRYAKRTSSKSTTYHAKLTSS----KSATLYAK 1765

Query: 365  LTSGNSALRR*KL 403
            LTS  SA R  KL
Sbjct: 1766 LTSSKSATRYAKL 1778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,141
Number of Sequences: 59808
Number of extensions: 351895
Number of successful extensions: 932
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)