Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0634
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p pro...    96   3e-20
BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p pro...    94   1e-19
BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p pro...    94   1e-19
AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB...    94   1e-19
AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC...    94   1e-19
BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p pro...    58   9e-09
BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p pro...    58   9e-09
AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA...    58   9e-09

>BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p
           protein.
          Length = 142

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
 Frame = +2

Query: 53  KMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKT 232
           KM FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT
Sbjct: 12  KMSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKT 71

Query: 233 TEMKFKPAKSSKRTAL---TVLR*NPXXHSKATPSSKFRRPPTVLKSLT 370
           + + FK         L    V        +K T   K  +P T+++  T
Sbjct: 72  SAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFT 120



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 81  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 138

Query: 439 YK 444
           YK
Sbjct: 139 YK 140


>BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p
           protein.
          Length = 130

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
 Frame = +2

Query: 56  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 235
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 236 EMKFKPAKSSKRTAL---TVLR*NPXXHSKATPSSKFRRPPTVLKSLT 370
            + FK         L    V        +K T   K  +P T+++  T
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFT 108



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 439 YK 444
           YK
Sbjct: 127 YK 128


>BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p
           protein.
          Length = 130

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
 Frame = +2

Query: 56  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 235
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 236 EMKFKPAKSSKRTAL---TVLR*NPXXHSKATPSSKFRRPPTVLKSLT 370
            + FK         L    V        +K T   K  +P T+++  T
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFT 108



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 439 YK 444
           YK
Sbjct: 127 YK 128


>AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB,
           isoform B protein.
          Length = 130

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
 Frame = +2

Query: 56  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 235
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 236 EMKFKPAKSSKRTAL---TVLR*NPXXHSKATPSSKFRRPPTVLKSLT 370
            + FK         L    V        +K T   K  +P T+++  T
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFT 108



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 439 YK 444
           YK
Sbjct: 127 YK 128


>AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC,
           isoform C protein.
          Length = 157

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
 Frame = +2

Query: 56  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 235
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 236 EMKFKPAKSSKRTAL---TVLR*NPXXHSKATPSSKFRRPPTVLKSLT 370
            + FK         L    V        +K T   K  +P T+++  T
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFT 108


>BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p
           protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +2

Query: 119 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSKRTAL---TVL 289
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK         L    V 
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 290 R*NPXXHSKATPSSKFRRPPTVLKSLT 370
                  +K T   K  +P T+++  T
Sbjct: 69  SIITLDGNKLTQEQKGDKPTTIVREFT 95



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 56  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 113

Query: 439 YK 444
           YK
Sbjct: 114 YK 115


>BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p
           protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +2

Query: 119 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSKRTAL---TVL 289
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK         L    V 
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 290 R*NPXXHSKATPSSKFRRPPTVLKSLT 370
                  +K T   K  +P T+++  T
Sbjct: 69  SIITLDGNKLTQEQKGDKPTTIVREFT 95



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 56  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 113

Query: 439 YK 444
           YK
Sbjct: 114 YK 115


>AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA,
           isoform A protein.
          Length = 117

 Score = 58.4 bits (135), Expect = 9e-09
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +2

Query: 119 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPAKSSKRTAL---TVL 289
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK         L    V 
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 290 R*NPXXHSKATPSSKFRRPPTVLKSLT 370
                  +K T   K  +P T+++  T
Sbjct: 69  SIITLDGNKLTQEQKGDKPTTIVREFT 95



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 35/62 (56%)
 Frame = +1

Query: 259 EFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTRV 438
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 56  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 113

Query: 439 YK 444
           YK
Sbjct: 114 YK 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,842,583
Number of Sequences: 53049
Number of extensions: 523188
Number of successful extensions: 1880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)