Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0634
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    84   1e-18
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    39   5e-05
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    38   7e-05
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.4  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 84.2 bits (199), Expect = 1e-18
 Identities = 36/64 (56%), Positives = 51/64 (79%)
 Frame = +2

Query: 59  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 238
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 239 MKFK 250
           +KFK
Sbjct: 63  IKFK 66



 Score = 74.9 bits (176), Expect = 6e-16
 Identities = 37/65 (56%), Positives = 43/65 (66%)
 Frame = +1

Query: 256 EEFEEDRADGAKVKSVXTFEGNTLKQVQKAPDGLEVTXVREFGPEEMKAVMTAKDVTCTR 435
           EEFEE+  DG KVKSV T +GN L QVQK     + T  REF   EMKA+M   D+ CTR
Sbjct: 69  EEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIMKVDDIICTR 126

Query: 436 VYKVQ 450
           VYK+Q
Sbjct: 127 VYKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +2

Query: 56  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 235
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 236 EMKFK 250
              FK
Sbjct: 60  TKTFK 64


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 59  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 238
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 239 MKFK 250
             FK
Sbjct: 59  KTFK 62


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 468 RSRVLLLDLVDSGASHVLSCHXSFHLLRAEFPDVSDFKTV 349
           RSR+  L   D G S   S   +  L+R E  D  D +T+
Sbjct: 25  RSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTL 64


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 243 FISVVLKVEEVTKLYSSPSLRSSTV 169
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 273 VLFELFAGLNFISVVLKVEEVTKL 202
           V FEL +    I+ V+ +E++TKL
Sbjct: 78  VYFELLSPNRTINSVVYIEQLTKL 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,845
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)