Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0634
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r...    29   2.9  
At3g19970.1 68416.m02527 expressed protein                             28   6.8  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    27   8.9  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   8.9  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   8.9  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   8.9  

>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +2

Query: 311 SKATPSSKFRRPPTVLKSLTSGNSALRR*KLX*QLRT*LAPESTRSSKRTLLRG 472
           SK  P SK RR  +  K  TS +S+L +  +  +    L PEST SS RT+  G
Sbjct: 736 SKEKPQSKKRRDRSKKKPSTSISSSLDK-TVEHKPSVNLKPESTSSSLRTIEEG 788


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 282 VSAVLFELFAGLNFIS-VVLKVEEVTKLYSSPSLRSSTVGVTALAALRVI 136
           VS V     A L+F+S + + V  V  L S+PS   +T  VT+L+ALR +
Sbjct: 62  VSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLAT-SVTSLSALRSV 110


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 453 KGLYSEVGXWCXRFTNIPRT--IMFI*HLFYTL 545
           +GL+     WC  F   PRT  ++   HLF TL
Sbjct: 660 RGLFGIYHDWCESFNTYPRTYDLLHADHLFSTL 692


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 193
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 187
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 80  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 187
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,044
Number of Sequences: 28952
Number of extensions: 252655
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)