Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0631
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    30   0.36 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   3.4  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   5.9  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 206 CASPWYVENLTFFINVLRHD 147
           C SPW  E LT  IN+LR D
Sbjct: 165 CLSPWGTERLTATINILRSD 184


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 107 RTQLYLSNGDK*RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 238
           RT LYL +    R+H+   L + ++   +KD  +AH +    +C
Sbjct: 530 RTTLYLQHPVFNRYHSETELMRYIHHLQSKDLSLAHAMTPLGSC 573


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 130 WGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKD 234
           WGQ   + L TF++   F  Y       +++ELKD
Sbjct: 91  WGQFNRAHLPTFLRTPGFKLY-AWVFGCNLSELKD 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,784
Number of Sequences: 5004
Number of extensions: 65396
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)