Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0631
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384...    39   0.004
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837...    38   0.006
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758...    36   0.023
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879...    33   0.28 
04_03_0842 - 20234173-20234388,20235335-20235361                       28   6.1  
06_03_0957 + 26307062-26308987                                         28   8.1  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   8.1  
04_03_0844 - 20238517-20238732,20240094-20240108                       28   8.1  

>01_01_0524 -
           3845637-3845727,3845803-3845896,3846415-3846497,
           3846587-3846737,3847113-3847217,3847351-3847420,
           3847551-3847587,3848155-3848257,3848441-3848480
          Length = 257

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 79  LPIFQAHGDKDPVVSFKWGQMTASCLKTF-MKNVKFSTYQGLAHSSSIAELKDMQEFI 249
           +P+   HG  D VV +K G+ +A  LKT    NV F +Y  L H +   E+ ++ +++
Sbjct: 188 IPLLLCHGKADDVVLYKHGEKSADALKTTGFSNVVFKSYNRLGHYTVPEEMDEVCKWL 245


>04_04_1530 -
           34182235-34182336,34182436-34182543,34183627-34183748,
           34183817-34183961,34184045-34184097,34184187-34184478
          Length = 273

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +1

Query: 82  PIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIE 252
           PI  +HG  D VV F+ GQ     L+    + +F  Y GL HS S  EL  ++ +I+
Sbjct: 206 PILWSHGIADNVVLFEAGQAGPPFLQNAGFSCEFKAYPGLGHSISKEELYSLESWIK 262


>01_05_0685 +
           24273331-24273569,24275429-24275465,24275739-24275808,
           24275978-24276082,24276205-24276355,24276454-24276536,
           24276619-24276712,24276796-24276883
          Length = 288

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 79  LPIFQAHGDKDPVVSFKWGQMTASCLK-TFMKNVKFSTYQGLAHSSSIAELKDMQEFI 249
           LPI  +HG  D VV+++ G+ +A  L+ +  + + F  Y GL H +   E+ D+ +++
Sbjct: 220 LPILLSHGRADEVVTYRNGEKSADFLRGSGFQYLNFKPYNGLGHYTIPEEMDDVCKWL 277


>04_04_1532 -
           34187153-34187308,34187426-34187551,34187856-34187977,
           34188058-34188181,34189671-34189821,34190506-34190720,
           34191142-34191343,34191423-34191597,34191746-34192055,
           34192141-34192356
          Length = 598

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 61  LKAPVDLPIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQ 240
           L+  +  P+   HG    ++  K G+     L+    + +F  Y  L HS    EL   Q
Sbjct: 506 LQCGLQTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCEFKVYDRLGHSLEYYELDYCQ 565

Query: 241 EFIEK 255
            ++EK
Sbjct: 566 RWVEK 570


>04_03_0842 - 20234173-20234388,20235335-20235361
          Length = 80

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 625 NIIILQIVYRGVK-GYLVLIFA*YTIFIFLIKGFVLYKYAQQ 503
           N ++++ V +G+  G +VLI     + +F +  + LY YAQ+
Sbjct: 10  NNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQK 51


>06_03_0957 + 26307062-26308987
          Length = 641

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 257 GFSINSCMSLSSAMDELCASPWYVENLTF 171
           G  ++ C++L   + ELC  PW+   +TF
Sbjct: 453 GRPMDVCVALGLLLSELCDEPWHHRVITF 481


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 260  QGFSINSCMSLSSAMDELCASPWYVENLTFFINVLRHDAVI-CPHLKDTTGSLS 102
            +   + SC +L     + CAS   +E L F ++ LRH  V  CP L    GS S
Sbjct: 1628 KSLELQSCTALEHLKIQGCASLATLEGLQF-LHALRHMEVFRCPGLPPYLGSSS 1680


>04_03_0844 - 20238517-20238732,20240094-20240108
          Length = 76

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 628 NNIIILQIVYRGVK-GYLVLIFA*YTIFIFLIKGFVLYKYAQQ 503
           +N +I++ V +G+  G +VL+     + +F +  + LY YAQ+
Sbjct: 5   SNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQK 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,562,320
Number of Sequences: 37544
Number of extensions: 356314
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)