Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0631
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18) 35 0.054
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 29 2.7
SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2) 29 2.7
SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14) 29 3.6
SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40427| Best HMM Match : rve (HMM E-Value=2.7e-05) 29 3.6
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 29 3.6
SB_13117| Best HMM Match : rve (HMM E-Value=0.00037) 29 3.6
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 3.6
SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16) 29 3.6
SB_24099| Best HMM Match : rve (HMM E-Value=5.3e-16) 29 3.6
SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 3.6
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 3.6
SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16) 29 4.7
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 29 4.7
SB_34864| Best HMM Match : rve (HMM E-Value=2.9e-16) 28 6.2
SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4516| Best HMM Match : rve (HMM E-Value=6.5) 28 6.2
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 28 6.2
>SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)
Length = 244
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 82 PIFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEK 255
P+ HG D V+ KW TA + Y G H S+ ++ ++E+I K
Sbjct: 172 PLLLCHGHDDKRVNLKWAAHTAEYFMDLNVETELQVYYGQNHELSVHQVNHLKEWIIK 229
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 194 WYVENLTFFINVLRHDAVICPHLKDTTGSLSP*AWN 87
W V F+ +R D PH+ TT L AWN
Sbjct: 2127 WMVRPRVLFVRFVRRDLKHTPHISTTTKLLKYRAWN 2162
>SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
Length = 356
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/71 (18%), Positives = 35/71 (49%)
Frame = +1
Query: 229 KDMQEFIEKPCQHQSKCTIYYLKRLSYIQSTILDVLIIS*GEWVFGLSNIFSSL*ESNLK 408
K +++ + K C+ ++Y+ K + Y +S L + G+W+ + S+ +S
Sbjct: 239 KSVRQLVIKECKRVHYRSLYF-KEMMYFRSRSFHTLSLLRGQWLVKAQTLLQSIKDSKSS 297
Query: 409 SKILKNSTLNQ 441
++ ++ L++
Sbjct: 298 GTVVNSAILDK 308
>SB_53641| Best HMM Match : rve (HMM E-Value=7.9e-14)
Length = 691
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 476 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 529
>SB_41311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 469 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 522
>SB_40427| Best HMM Match : rve (HMM E-Value=2.7e-05)
Length = 193
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 123 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 176
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 795 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 848
>SB_13117| Best HMM Match : rve (HMM E-Value=0.00037)
Length = 296
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 235 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 288
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 978 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1031
>SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 310 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 363
>SB_53337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 354 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 407
>SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16)
Length = 550
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 352 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 405
>SB_24099| Best HMM Match : rve (HMM E-Value=5.3e-16)
Length = 307
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 76 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 129
>SB_16804| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 921
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 661 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 714
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 1098 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1151
>SB_18792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 533 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTNPYYKEANGFIERNVQ 586
>SB_11084| Best HMM Match : rve (HMM E-Value=5.6e-16)
Length = 413
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 182 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTNPYYKEANGFIERNVQ 235
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 143 RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 238
RHH+S ++++ QHT P PNS+ C
Sbjct: 167 RHHSSPQTQQLMDNQHTPHFVFPVPSPNSRIC 198
>SB_34864| Best HMM Match : rve (HMM E-Value=2.9e-16)
Length = 304
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 123 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 176
>SB_54350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 664 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 717
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEK 255
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+
Sbjct: 1026 IFEEHGIPDKLVTGHDTQFTSALFKVFS-----STY-GFIHTTTSPYYKEANGFIER 1076
>SB_4516| Best HMM Match : rve (HMM E-Value=6.5)
Length = 262
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 2 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 55
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 85 IFQAHGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKPCQ 264
IF+ HG D +V+ Q T++ K F STY G H+++ K+ FIE+ Q
Sbjct: 990 IFEEHGIPDKLVTGHDTQFTSALFKGFS-----STY-GFIHTTTSPYYKEANGFIERNVQ 1043
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,631
Number of Sequences: 59808
Number of extensions: 424610
Number of successful extensions: 1437
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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