Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0631
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 179 LTFFINVLRHDAVICPHLKDTTGS 108
           L   INVL H  VIC   KD T +
Sbjct: 11  LFVIINVLLHGQVICFVCKDITST 34


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 309 HSVYYFGCANYIVG*MGIWFKQHFFIFIGEQFKV 410
           + V +FG  + +   +G W  +HFF + G   ++
Sbjct: 317 NGVLFFGLLSDLA--IGCWNSEHFFEYGGNNIEI 348


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  VMSLSCWLPRHGYFPG 57
           V+  SC+  R+ YFPG
Sbjct: 94  VLPNSCYQERYEYFPG 109


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  VMSLSCWLPRHGYFPG 57
           V+  SC+  R+ YFPG
Sbjct: 94  VLPNSCYQERYEYFPG 109


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -3

Query: 445 KFGLKCYFSKF*TLNCSPIKMKKC 374
           K+G  C    +    C   ++KKC
Sbjct: 224 KYGNNCEIDMYMRRKCQECRLKKC 247


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = -3

Query: 445 KFGLKCYFSKF*TLNCSPIKMKKC 374
           K+G  C    +    C   ++KKC
Sbjct: 21  KYGNNCEIDMYMRRKCQECRLKKC 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,854
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)