Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0629
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    28   7.4  
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    28   7.4  

>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
           protein ZK637.9b protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 450 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 361
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 450 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 361
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 PRAAVTTDDH*YVSSIHPMDKKKHK*H 365
           P+ A  TDD  Y+  IHP +K +++ H
Sbjct: 413 PKHAFHTDDLYYIMGIHPFEKDENEEH 439


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 450 CFIIIVWLDTSTLSTSMQAATMWNKSDKRV 361
           C  + +WL+    + S +A  +WNK+  RV
Sbjct: 15  CASVCIWLNGEPTAISNRAENLWNKAKYRV 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,109
Number of Sequences: 27780
Number of extensions: 287856
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)