Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0628
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.43 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.1  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   9.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.3  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 493 KLYIRRSLRLGLKLIAVIISI*VYTWESVT*SFSLTAIIRCFP--WSNITVLIFWIAFYL 666
           KL  + +   GL L+ +  S  ++   S+   F ++A +   P  W  + +L FW AF++
Sbjct: 224 KLIKQLNATYGLILLLMFTSHFIFIVVSI---FYMSAYLISNPIMWDRVMLLTFWSAFFI 280

Query: 667 V 669
           V
Sbjct: 281 V 281


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 73  LTLY*YVPFGFSFYLCIG 20
           LT Y Y+PFG     CIG
Sbjct: 422 LTPYTYLPFGEGPRNCIG 439


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 401  CFYIKKYVLDWNAQLQC 351
            CF+  K  + WN  L C
Sbjct: 1115 CFFPSKIRICWNVLLNC 1131


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 604 IIRCFPWSNITVLIFWIAFYL 666
           +I+ +  S + V+I W++F+L
Sbjct: 71  LIQIYIPSGLIVIISWVSFWL 91


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 573 FPCVHLNTYNHCNQFES 523
           F C+HL+  + C  +++
Sbjct: 83  FECIHLSVLHKCYDYDA 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,754
Number of Sequences: 336
Number of extensions: 3275
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)