Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0628
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    31   0.76 
AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase...    29   4.1  
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase...    29   4.1  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 259 LITH-INHIT*YLNVGRVWFLSMYLSGYFFISHCNWAFQSNTYFLI*KQKMIYYPPKKIR 435
           +I H + H+   + + R   + ++ +  F + H   AF   T+FL  +Q +++Y PK  +
Sbjct: 78  IILHTLLHVIHEIVIIRFLIVVIFYALCFTMYHLTKAFYLTTFFLAFQQFLVFYFPKLEK 137

Query: 436 EF*ILKKYLSYVNIFKLY 489
           +  I++K+  + +++ LY
Sbjct: 138 QVSIIQKHF-FKDVWYLY 154


>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 328 LSGYFFISHCNWAFQSNTYFLI*KQKMIYYPPKKIREF*ILKKYLSYVNIFKLY*KLYIR 507
           +  +F I HC WA    ++ L+     IY  PK IR +  L    +  + F+    L+I+
Sbjct: 1   MHAFFEIWHCIWALLGCSFNLMLIYMAIYKSPKTIRSYATLIINFAVTDFFECALDLFIQ 60


>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform a protein.
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 381 VFFNIKTKNDILSSQKN*GILNSKK 455
           VFFN+KT ND+LS+      ++S+K
Sbjct: 558 VFFNVKTLNDLLSTAPGSTTMSSRK 582


>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform b protein.
          Length = 1068

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 381 VFFNIKTKNDILSSQKN*GILNSKK 455
           VFFN+KT ND+LS+      ++S+K
Sbjct: 551 VFFNVKTLNDLLSTAPGSTTMSSRK 575


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 502 IRRSLRLGLKLIAVIISI*VYTW 570
           +R SL LGL L AV I++ +YT+
Sbjct: 177 VRISLTLGLNLFAVFINVAIYTF 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,475
Number of Sequences: 27780
Number of extensions: 268567
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)