Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0628
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.29 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 543 DYKYLSVHMGICDIVLFTNGNNPMFSLVQHHGTYFLDSLLF 665
           D +  ++  GIC + L    NN  +S +  HG Y++++  F
Sbjct: 241 DGESFTLKNGICGMALSPVTNNLYYSPLASHGLYYVNTAPF 281


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 634 TVLIFWIAFYLVLWTG 681
           T+L+ WI  Y  +W G
Sbjct: 179 TLLLVWILCYFCIWKG 194


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 604 IIRCFPWSNITVLIFWIAFYLVL 672
           +I+ F  S + V++ W +F+L L
Sbjct: 203 LIQTFAPSTLVVMLSWFSFWLGL 225


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 399 TKNDILSSQKN*GILNSKKISFIRKYFQIVLK 494
           TKN ++   K   ILN++ I  I+    I+LK
Sbjct: 193 TKNKLIEESKTVFILNNEIIRSIQGTGTIILK 224


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 634 TVLIFWIAFYLVLWTG 681
           T+ + WI  Y  +W G
Sbjct: 212 TLAVVWIMCYFCIWKG 227


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 634 TVLIFWIAFYLVLWTG 681
           T+ + WI  Y  +W G
Sbjct: 265 TLAVVWIMCYFCIWKG 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,810
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)