Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0626
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   5.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   5.9  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   7.8  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   7.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.8  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 221 YYFCKQSYMNKLIFKKKTGSQLQMSSVSHFNFFIMS 328
           Y  CK   +N L   +K   +   S   +F+F+I S
Sbjct: 29  YAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITS 64


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 221 YYFCKQSYMNKLIFKKKTGSQLQMSSVSHFNFFIMS 328
           Y  CK   +N L   +K   +   S   +F+F+I S
Sbjct: 29  YAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITS 64


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 128 VFLCLKLWSKLP 163
           VFLC KL  K P
Sbjct: 306 VFLCYKLMEKFP 317


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 122 YYVFLCLKLWSKL 160
           Y+ F  LKLWS+L
Sbjct: 89  YHFFGTLKLWSQL 101


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 542 TDVKMPNRDTPC 507
           T+++ PN D PC
Sbjct: 610 TNIQCPNADLPC 621


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 542 TDVKMPNRDTPC 507
           T+++ PN D PC
Sbjct: 610 TNIQCPNADLPC 621


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,389
Number of Sequences: 336
Number of extensions: 2767
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)