Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0626
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         31   0.69 
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    27   8.5  

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 182 LFSIINVPRLIYFYYFCKQSYMNKLIFKKKTGSQLQMSSVS 304
           L +++  PR I+ +    Q   NKL F K+ GSQL + SV+
Sbjct: 257 LAALMCTPRSIHSWDIVVQRVGNKLFFDKRDGSQLDLLSVN 297


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 364 KKPLWNCVXLFLAHDKKIKVTD 299
           +K  WNC+ LFL  +++IK+ D
Sbjct: 27  EKEKWNCLDLFLKLNREIKLED 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,785
Number of Sequences: 37544
Number of extensions: 205450
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)