Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0626
         (590 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    23   7.4  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   9.8  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   9.8  

>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 387 FYFDVFCNYLPW 422
           +Y D  CN LPW
Sbjct: 619 YYRDAVCNALPW 630


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 79  TIRRKILRLLVNLSLLCFFVSKVVVKV 159
           T+RRK L   VNL + C  +S + + V
Sbjct: 234 TMRRKTLFYTVNLIIPCMGISFLTILV 260


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 79  TIRRKILRLLVNLSLLCFFVSKVVVKV 159
           T+RRK L   VNL + C  +S + V V
Sbjct: 247 TLRRKTLFYTVNLIIPCVGISYLSVLV 273


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,794
Number of Sequences: 2352
Number of extensions: 9713
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56768445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)