Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0626
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    31   0.46 

>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -3

Query: 474 SQYFSGILMLKL*VLINPMVNNYRKRQNKNSLLVXPLKSRSGIVYXYFWLMIKKLK*LTL 295
           S     +L L + +++  +  N  K +NK+S+ +      S +++ + WL+ + L  + L
Sbjct: 169 SMLILSLLTLIIYIVMIRIFKNKNKSRNKDSIKIMRRLQLSVVIFVFTWLVSQALAMVFL 228

Query: 294 ---DICNWEPVFFLNISLFI 244
                 +WE + F++ S FI
Sbjct: 229 HDDGSIHWEKIVFVHNSFFI 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,418
Number of Sequences: 27780
Number of extensions: 221853
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)