Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0626
(590 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 3.9
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 5.2
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 6.8
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 6.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.8
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 6.8
DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor p... 21 9.0
DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 21 9.0
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 9.0
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVVKV 159
T+RRK L VNL + C +S + V V
Sbjct: 235 TMRRKTLFYTVNLIIPCMGISFLTVLV 261
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 3.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVVKV 159
T+RRK L VNL + C +S + V V
Sbjct: 231 TLRRKTLFYTVNLIIPCVGISFLSVLV 257
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.8 bits (44), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVV 153
T+RRK L VNL + C +S + V
Sbjct: 230 TLRRKTLFYTVNLIVPCVSISYLSV 254
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 526 PTGTLLVWYYP*AVNRIESVF*WYFNVK 443
P G L YYP + + ++F +++ K
Sbjct: 92 PRGELFSLYYPQLLREMSALFKLFYHAK 119
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -2
Query: 526 PTGTLLVWYYP*AVNRIESVF*WYFNVK 443
P G L YYP + + ++F +++ K
Sbjct: 92 PRGELFSLYYPQLLREMSALFKLFYHAK 119
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVV 153
T+RRK L VN+ + C +S + V
Sbjct: 239 TMRRKTLFYTVNIIIPCMGISFLTV 263
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVV 153
T+RRK L VN+ + C +S + V
Sbjct: 239 TMRRKTLFYTVNIIIPCMGISFLTV 263
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 6.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 315 KLK*LTLDICNWEPVFFLNIS 253
+L L + WE V+FLN++
Sbjct: 221 RLSRLVRYVSQWEEVYFLNMA 241
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.4 bits (43), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 79 TIRRKILRLLVNLSLLCFFVSKVVVKV 159
T+RRK L VNL + C ++ + V V
Sbjct: 244 TMRRKTLFYTVNLIIPCVGITFLTVLV 270
>DQ091184-1|AAZ42364.1| 157|Apis mellifera lipophorin receptor
protein.
Length = 157
Score = 21.0 bits (42), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 382 SPRVPSKKPLWNC 344
+PR+ SK PL +C
Sbjct: 50 APRINSKSPLLSC 62
>DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor
protein.
Length = 128
Score = 21.0 bits (42), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 382 SPRVPSKKPLWNC 344
+PR+ SK PL +C
Sbjct: 50 APRINSKSPLLSC 62
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 333 NSXTQFQSGFLEGTRGENFYFDV 401
N TQ GFL+G G+N + V
Sbjct: 16 NLTTQDVDGFLQGFPGKNSPYTV 38
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,415
Number of Sequences: 438
Number of extensions: 2950
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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