Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O63545 Cluster: NADH dehydrogenase subunit 5; n=1; Bodo...    37   0.41 
UniRef50_Q4UBB4 Cluster: Rer1 family protein, putative; n=2; The...    36   1.3  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.9  

>UniRef50_O63545 Cluster: NADH dehydrogenase subunit 5; n=1; Bodo
           saltans|Rep: NADH dehydrogenase subunit 5 - Bodo saltans
          Length = 212

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 342 CLLY-MYIFCIIMYCLWYTATYLLYFYILQFFCKLNGCLEEIAFSDKTAYCANVCAF*LF 166
           CLLY +++  +  + L+    + LYF  L FF  L  CL   +F D    C   C F +F
Sbjct: 78  CLLYCLFLMFMCFFLLFCCLDFFLYFVFLGFFYFLMYCLFFFSFFDFVFLCVVFCCFFVF 137


>UniRef50_Q4UBB4 Cluster: Rer1 family protein, putative; n=2;
           Theileria|Rep: Rer1 family protein, putative - Theileria
           annulata
          Length = 270

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 339 LLYMYIFCIIMYCLWYTATYLLYFYIL 259
           L+Y YI C++ YC++Y   YL+Y  +L
Sbjct: 230 LIYYYIHCMLHYCIYYCIHYLIYTLLL 256


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 580 WYLPARTHKTSYHQ 539
           WYLPARTHK SYH+
Sbjct: 572 WYLPARTHKRSYHR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,393,354
Number of Sequences: 1657284
Number of extensions: 9301359
Number of successful extensions: 22252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22225
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)