Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    29   3.5  
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    28   8.2  

>05_05_0030 -
           21698625-21698752,21699589-21699627,21699708-21699822,
           21699927-21699992,21701064-21701203,21701424-21701473,
           21701608-21702045,21702757-21702839,21702941-21702977,
           21703366-21703457,21703531-21703615,21703950-21704029,
           21704049-21704105,21704350-21704747,21706322-21707223,
           21707331-21707421,21708123-21710273,21710375-21710813,
           21711180-21711299
          Length = 1836

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 574 GTTALPISAVKQ*RVRFEGRGSRCNYTGSRIYIP 675
           G T +PIS +   R R  GRGSRC    SR ++P
Sbjct: 145 GCTQVPISILVFHR-RLTGRGSRCRSPQSRSFMP 177


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 657  PGIVTTAAPPFEPNALLLHGRNRQGGGTYPRGLTRR 550
            PG+ + A P    +  LL G  +  GG++   LTRR
Sbjct: 919  PGLTSLARPEIIEDIQLLEGLVQASGGSWQSSLTRR 954


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,113,004
Number of Sequences: 37544
Number of extensions: 257123
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)