Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_11591| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_57551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   8.4  

>SB_25802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -3

Query: 681 PLWDINSRPGIVTTAAPPFEPNALLLHGRNRQGGGTYPRGLTRRP 547
           PL+D  + P  VTTA P +   A +           YP   T  P
Sbjct: 43  PLYDTTATPSYVTTATPSYVTTAPVYSSETTTAASAYPSSYTAAP 87


>SB_11591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 638 LPRPSNRTRYCFTAEIGRAVV 576
           LPRP+ ++R+CF  E G+  V
Sbjct: 33  LPRPTGKSRFCFCEEKGKGYV 53


>SB_57551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 336 LYMYIFCIIMYCLWYTATYL 277
           +Y YIF +++ C++Y+ TY+
Sbjct: 48  MYKYIFIVLLRCVFYSFTYI 67


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 333 YMYIFCIIMYCLWYTATYLLY-FYILQFFCKLNGCLEEIAFSDKTA 199
           Y Y +C   YC +Y   Y  Y  Y   ++C  + C    A +  TA
Sbjct: 489 YYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCS-CTATTATATTTA 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,732,224
Number of Sequences: 59808
Number of extensions: 316296
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)