Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine re...    28   5.6  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF016451-1|AAB66002.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein38 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 339 LLYMYIFCIIMYCLWYTATYLLYFYILQFFCKLNGC 232
           +LY  +F I    L   ATYLL F ++  F ++ GC
Sbjct: 109 VLYHKMFSITFTKLIVMATYLLSFILITLFFQILGC 144


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
            C09F9.2 protein.
          Length = 1642

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 681  PLWDINSRPGIVTTAAPPFEPNALLLHGRNRQG 583
            P+  +++  G    AAP F  NA+  HG+N +G
Sbjct: 1049 PMNYVHTTGGAPIKAAPEFFENAMKYHGKNARG 1081


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 333 YMYIFCIIMYCLWYTATYLLYFYILQFFCKLNGCLEEIAFSDKT 202
           Y+YI  I++Y LW      + +  L +F  L G    IAF D T
Sbjct: 238 YLYIVHILVY-LWIVFICTVAYMTLFYFEVLEGPENVIAFQDST 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,424
Number of Sequences: 27780
Number of extensions: 233084
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)