Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 327 YIFCIIMYCLWYTATYLLYFYI 262
           Y+F +I+ C+   +  LL FY+
Sbjct: 216 YVFNLILPCILINSVALLVFYV 237


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 669 INSRPGIVTTAAPPFEPNALLLHGRNRQGGGTYPRGLTRRPTT 541
           I S P   T+++PP +  A       R GG T  + L R  +T
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKST 559



 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 343 LFIIYVYILYNNVLSMVHRNIPAVFLYFTVF 251
           LF    +I+Y+++ S     I  VFLY+ +F
Sbjct: 337 LFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 613 RVRFEGRGSRCNYTGSRIYI 672
           R +F    +RCN  G RIY+
Sbjct: 94  REQFIDMVARCNKAGVRIYV 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,012
Number of Sequences: 438
Number of extensions: 2927
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)