Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0625
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24090.1 68415.m02877 ribosomal protein L35 family protein co...    31   0.73 
At5g53330.1 68418.m06628 expressed protein                             28   6.8  

>At2g24090.1 68415.m02877 ribosomal protein L35 family protein
           contains Pfam profile PF01632: ribosomal protein L35
          Length = 145

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 5   SMASCFMLRS--PCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPSRA*RSFTSKNSQK 178
           +++ C  LRS  P ++L  SV  A SL    S++ LR V  +KI       +  S NSQK
Sbjct: 10  NVSFCHPLRSSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKI------STVASPNSQK 63

Query: 179 AHTF 190
            H+F
Sbjct: 64  LHSF 67


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 597 RNRQGGGTYPRGLTRRPTTSKYPN 526
           RN+ GG +YPR +   P+TS  P+
Sbjct: 6   RNKSGGPSYPRPMYGPPSTSPSPS 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,359
Number of Sequences: 28952
Number of extensions: 200778
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)