Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0624
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 4.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.4
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 5.9
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.9
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 7.8
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 7.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.8
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 25 7.8
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 7.8
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 7.8
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +2
Query: 356 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 481
++IFL P +G+ +D W+ F+ E DW G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 132 DKLYFDGVKITDVKVDKLTTFFENFEFD 215
D+L FD +K + V L F +FEFD
Sbjct: 283 DRLSFDNIKPALICVGHLLQFCSSFEFD 310
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 502 CHIKEDSVPMTEIMKMLDEGKVPFDMSEEFCY 597
C+++ P I K++D G++ FD + + CY
Sbjct: 462 CYVEIHDSP--SIRKLIDIGEIDFDQAFKICY 491
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +3
Query: 120 PYTQDKLYFDGVKITDVKVDKLTTFFENF----EFDASNSVYFSKEEIKTTTSMTLRCAS 287
PY+ K+ F K D V+ TFF++ + D S FSK TTS TL+ S
Sbjct: 1815 PYSSQKVNFS--KYKDF-VESRPTFFQSSVTFTDADGSTRKTFSKRLENLTTSNTLKSLS 1871
Query: 288 HD 293
D
Sbjct: 1872 VD 1873
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 254 DNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIPLTLED 415
+N+ + R H P + + N S A + + L K D N +P+TL D
Sbjct: 485 ENYYKNYSARLIHEYHIPLRLAKHLSHNYGSRAPLILELYSKTDFNKLPVTLAD 538
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 302 SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 400
S F V++ VD +VAS + AP DN P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 231 YFSKEEIKTTTSMTLRCASHD*TTAPSTLTLRLILMSPVTLLSKSSWLPN---TMTTEYL 401
Y + E TTT T C+S T + T + S + S +S P+ +MTT +L
Sbjct: 563 YTTSPEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHL 622
Query: 402 S 404
S
Sbjct: 623 S 623
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 493 RIADNLVLTSGEFSCEPV 440
RI D LV+T+G+ S EP+
Sbjct: 59 RIEDTLVVTAGQTSSEPI 76
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -3
Query: 200 LEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 27
LE+CC DFN D + K V LQ L++L V ++ E + I V V
Sbjct: 126 LEQCCVVFDFNDPSTD-LYGKEVKREALQDLIDLISVRKEAIDESLYPSIVHMFAVNV 182
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 400 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 308
R ++V+V G + FD +T + ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,964
Number of Sequences: 5004
Number of extensions: 54067
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -