Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0624
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 30 2.0
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 30 2.0
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 30 2.0
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 30 2.0
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 30 2.0
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 30 2.0
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 30 2.0
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 2.0
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2) 29 3.5
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404
>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 9 FMPSAMDFYQTSLRDPAFYQLYN--RIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKVDK 182
++ A+D + TSL P +Y ++ I+ + FK++ T+D + +T +
Sbjct: 478 YLNKALDIFNTSLVTPIYYVMFTLLTIIASAILFKEWKLMDTKDTIGSICGVLTIILGVF 537
Query: 183 LTTFFENFEFDASNSVYFSKEE 248
L F+N +F + +F K++
Sbjct: 538 LLHAFKNVKFSLKDLNFFQKQK 559
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191
>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 15 SWLRLFKLDWPSIKLVQGKNTALSDLTE 42
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 399 SWLRLFKLDWPSIKLVQGKNTALSDLTE 426
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 231 YFSKEEIKTTTSMTLRCASHD*TTAPSTLTLR 326
Y + + T+ + R A H+ TTAPSTLT+R
Sbjct: 372 YTRQADHTLVTAPSTRQADHNLTTAPSTLTMR 403
>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
Length = 419
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+LDW + KL G+N + + E
Sbjct: 349 SWLRLFKLDWPSIKLVQGKNIALSDLTE 376
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+L+W + KL G+N + + E
Sbjct: 344 SWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 416 NWMKFFELDWFTTKLTAGQNKIIRNSNE 499
+W++ F+L+W + KL G+N + + E
Sbjct: 827 SWLRLFKLEWPSIKLVQGKNTALSDLTE 854
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,500
Number of Sequences: 59808
Number of extensions: 394767
Number of successful extensions: 935
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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