Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0624
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z92806-8|CAJ43452.1|  307|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL021501-3|CAJ43442.1|  307|Caenorhabditis elegans Hypothetical ...    28   7.2  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    27   9.5  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    27   9.5  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    27   9.5  
AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alph...    27   9.5  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 255 TTTSMTLRCASHD*TTAPSTLTLRLILMSPVTLLSKSSWLPNTMTTE 395
           TTT+ T    + + TT P+T T      +P T  ++++  P T TTE
Sbjct: 103 TTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTE 149


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/82 (26%), Positives = 40/82 (48%)
 Frame = +3

Query: 15  PSAMDFYQTSLRDPAFYQLYNRIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKVDKLTTF 194
           P   D YQ    +  ++ +YN++ E I E K +L+P   +      VK  ++   K+   
Sbjct: 84  PGPSDHYQD---EDDYFPVYNQLKELIEELKVWLEPAEAEP-----VKQVEIN-RKVLCG 134

Query: 195 FENFEFDASNSVYFSKEEIKTT 260
           +  FEF   NS++ + E++  T
Sbjct: 135 YILFEFLQGNSIFEAYEKLCVT 156


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 123 YTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSK 242
           Y   K    G+ ++   +DKL    ENFEF A N+  + K
Sbjct: 119 YPHHKYILHGLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158


>U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical
           protein K05B2.4 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 78  RIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEE 248
           R  E  + F   L PYT D++ F G+      V  LTT F+  +   S +  F+ +E
Sbjct: 195 RYFEDAINFVTSL-PYTNDRIGFQGISFGGTLVMFLTTRFKQIKAACSINGSFTMDE 250


>Z92806-8|CAJ43452.1|  307|Caenorhabditis elegans Hypothetical
           protein Y61B8A.4 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 158 LDTIKV-KFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 27
           LD  K+ K V+++  Q LL++ ++FH    +L   RI++  LVK+
Sbjct: 195 LDQWKMAKSVIALDKQSLLDIGNIFHLHQFKLQLVRISREELVKI 239


>Z81531-8|CAB04322.2|  344|Caenorhabditis elegans Hypothetical
           protein F36D3.9 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 572 LICPKSSVTCLKDSCWPRGTEGGFPFQLF 658
           +I P   +TC   SC   G +GGFP++ F
Sbjct: 153 IISPTDLLTCCGMSCG-EGCDGGFPYRAF 180


>AL021501-3|CAJ43442.1|  307|Caenorhabditis elegans Hypothetical
           protein Y61B8A.4 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 158 LDTIKV-KFVLSVRLQVLLELNDVFHNSVVELIESRITKRSLVKV 27
           LD  K+ K V+++  Q LL++ ++FH    +L   RI++  LVK+
Sbjct: 195 LDQWKMAKSVIALDKQSLLDIGNIFHLHQFKLQLVRISREELVKI 239


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 496 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 362
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 496 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 362
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 496 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 362
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AF040997-1|AAB97173.1|  524|Caenorhabditis elegans importin alpha 1
           protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/74 (24%), Positives = 40/74 (54%)
 Frame = -3

Query: 248 LLFTKVHAVAGVEFKVLEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVE 69
           LL +    +  ++   ++E    +  N++  +T+    VL V++Q+L +L+DV+ N V+ 
Sbjct: 66  LLKSVADGLQSMQETTIQEALTVLHENLN--NTVWTIHVL-VKVQILHKLSDVYCNRVIS 122

Query: 68  LIESRITKRSLVKV 27
                +  R+L+K+
Sbjct: 123 QTTRLLISRTLLKI 136


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
           protein Y48G9A.1 protein.
          Length = 1725

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 77  VVEL-IESRITKRSLVKVHCTRHESL 3
           VVEL IE  I+K  LV++H  RH+ +
Sbjct: 145 VVELGIEQSISKEILVRIHVARHDPI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,380
Number of Sequences: 27780
Number of extensions: 301198
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)