Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0624
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   3.8  
At5g35370.1 68418.m04204 lectin protein kinase family protein co...    28   5.0  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   5.0  
At4g10180.1 68417.m01668 light-mediated development protein 1 / ...    27   8.8  
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    27   8.8  
At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A...    27   8.8  
At2g33350.1 68415.m04088 hypothetical protein                          27   8.8  
At1g28520.1 68414.m03506 expressed protein                             27   8.8  

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 246 PLY*STRCCWRRIQSSRRMLSIYR 175
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At5g35370.1 68418.m04204 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 870

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 263 RGCLNLLFTKVHAVAGVEFKVLEECCQFIDFNISYLDTIKVKFVLS 126
           R CLNLLF  V   + +EF        F   N+ ++D+ K  F+LS
Sbjct: 9   RFCLNLLFVFVSCASSIEFVY----PNFTASNLRFVDSSKGAFLLS 50


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 385 IVFGSQEDFDNSVTGDIRINLNV 317
           I+F SQ+DFDN +T  I  + ++
Sbjct: 85  IIFDSQDDFDNDITASIDFSSSI 107


>At4g10180.1 68417.m01668 light-mediated development protein 1 /
           deetiolated1 (DET1) identical to Light-mediated
           development protein DET1 (Deetiolated1)
           (Swiss-Prot:P48732) [Arabidopsis thaliana]
          Length = 543

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +3

Query: 54  PAFYQLYNRIVEYIVEFKQYLKPYTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVY 233
           PAF+ +YN     IV F Q     + + LY    + +D      +T F NF    SN+VY
Sbjct: 360 PAFFAVYNMETTDIVAFYQ----NSAEDLYQLFEQFSDHFTVSSSTPFMNFVTSHSNNVY 415

Query: 234 FSKEEIKTT 260
            + E++K T
Sbjct: 416 -ALEQLKYT 423


>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 308 FNVNIEVDSNVASDAVVKIFLAPKYDDNGI 397
           F V   VDSN+A D+  K  LAP  +  GI
Sbjct: 14  FGVISSVDSNIAYDSTGKYVLAPALEKVGI 43


>At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B' (B'beta) identical to B'
           regulatory subunit of PP2A [Arabidopsis thaliana]
           GI:2160692; similar to SWISS-PROT:Q28653
           serine/threonine protein phosphatase 2A, 56 kDa
           regulatory subunit, delta isoform (PP2A, B subunit, B'
           delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
           B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
           isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
           cuniculus]; contains Pfam domain, PF01603: Protein
           phosphatase 2A regulatory B subunit (B56 family)
          Length = 499

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 200 LEECCQFIDFNISYLDTIKVKFVLSVRLQVLLELNDVFHNSVVELIES 57
           L+ CC   DF     DTIK      ++ Q LLEL D   +   ++ ES
Sbjct: 91  LQNCCFLFDFT----DTIKNARDKEIKRQTLLELVDFIQSGSSKISES 134


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 385 IVFGSQEDFDNSVTGDI 335
           I+F SQEDF+N +T  I
Sbjct: 127 IIFDSQEDFENDITASI 143


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 621 GQHESFRHVTELFGHIKR-YFPFVEHLHNFSHWH 523
           G HES + +   FG +KR Y+   + LH+F  WH
Sbjct: 342 GWHESRKQIMVEFGGLKRSYYMDPQPLHHF-EWH 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,666
Number of Sequences: 28952
Number of extensions: 273507
Number of successful extensions: 707
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)