Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0620
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    50   2e-07
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    37   0.001
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    31   0.12 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.36 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   5.9  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   5.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.8  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
 Frame = +3

Query: 3   NMRYNELGTTGIKVSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQG 182
           N+ +  LG +G+KVS  S+G        G YD + +   +K++ +LGIN  +T   Y  G
Sbjct: 12  NVPFRFLGRSGLKVSAFSLGGWLTYGNEG-YDVEHTKNCLKQAWDLGINTFDTAEIYSNG 70

Query: 183 SSEKDIGKAL--VGVPRDSXYIGSXVAATTRSTL-KMFDFSAEKXXXXXXXXXXXXXXDY 353
           +SE  +GKA+  +G  R    I + V     + L      S +                Y
Sbjct: 71  NSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPY 130

Query: 354 VDLIQVHDITFAPDTSVXLKETLPVLEXXVRVXXARFIG 470
           VD+I  H     PD SV ++E +      ++   A + G
Sbjct: 131 VDVIMAH----RPDPSVPMEEVVRAFTQLIQDGKAFYWG 165


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
 Frame = +3

Query: 12  YNELGTTGIKVSHISVGSAAFSNI-----YGKYDEKRSLELIKESLNLGINYLETGPWYG 176
           Y  LG +G+KVS + +G  ++        +   DE+   +++K + + GI   +T   Y 
Sbjct: 9   YGCLGNSGLKVSKLILGCMSYGKKEYWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYS 68

Query: 177 QGSSEKDIGKAL--VGVPRDSXYIGSXVAATTRSTL-KMF 287
            G SE+ +GK +    +PR S  I S      R  L K+F
Sbjct: 69  AGVSEELVGKFIRKYEIPRSSIVILSKCFFPVRKDLIKIF 108


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 42  VSHISVGSAAFSNIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGK 206
           V  I  G      +YG   E+ +  ++  + +LG  + ++   YG G++E+ IG+
Sbjct: 13  VPAIGFGCMGLHAMYGPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANEECIGR 67


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 206 LPNVLFGAALTVPGSGFQIV 147
           LPNV FGAA   PGSG   V
Sbjct: 119 LPNVFFGAAAAQPGSGTPFV 138


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 107 KPGAH*RKLESRYQLSGNRTLVRSGQLRKG 196
           KP    R++  RY L+G   ++  GQL  G
Sbjct: 687 KPEGEMRRIVGRYGLTGKSQVIPMGQLSDG 716


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  DEKRSLELIKESLNLGINYLETGPWYGQGSSEKDIGKAL 212
           D++  +  +K    L IN+++T   YG   SE  + +AL
Sbjct: 46  DKEACIATLKRLPELNINFIDTADSYGPEVSENLLREAL 84


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 140  EIQAFFNELQASFLVIFPIDIAESGTSNTNVRNFDTG 30
            EIQ+F NE+  +   I  +D+   G  +  V    TG
Sbjct: 4802 EIQSFLNEISGNLQYISLLDLPVHGMMDIAVNFLSTG 4838


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 275 SAPCRSGDXTPDVXRITGNSN*SLPNVLFGAALTVPGSG 159
           S P      TP    ++G +N + P     A  T PGSG
Sbjct: 241 STPAFGASTTPFGQNLSGTTNNATPFGTSNATNTTPGSG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,865
Number of Sequences: 5004
Number of extensions: 31208
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)